Metabarcoding dataset of plankton, in the northwestern Mediterranean, from MOOSE-GE campaigns (2017-2019).

Dados como um arquivo DwC-A	download 118.895 registros em English (29 MB) - Frequência de atualização: atualmente
Metadados como um arquivo EML	download em English (23 KB)
Metadados como um arquivo RTF	download em English (11 KB)

Descrição

MOOSE GE is a yearly ocean-monitoring cruise which is part of the MOOSE program https://www.moose-network.fr, within the Research Infrastructure ILICO, the aim of which is to monitor the North-Western Mediterranean (considered to act as a model system for larger ocean basins).This dataset contains the taxonomic occurrence from metabarcoding collected by triple net (64, 200 to 500µm mesh) and niskin bottle.

Registros de Dados

Os dados deste recurso de ocorrência foram publicados como um Darwin Core Archive (DwC-A), que é o formato padronizado para compartilhamento de dados de biodiversidade como um conjunto de uma ou mais tabelas de dados. A tabela de dados do núcleo contém 118.895 registros.

Também existem 2 tabelas de dados de extensão. Um registro de extensão fornece informações adicionais sobre um registro do núcleo. O número de registros em cada tabela de dados de extensão é ilustrado abaixo.

118895

1307845

118895

This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.

Versões

A tabela abaixo mostra apenas versões de recursos que são publicamente acessíveis.

Como citar

Pesquisadores deveriam citar esta obra da seguinte maneira:

Lescot M, Lezzoche N (2026) Planktonic cummunities across the Northwestern Mediterranean Sea.OSU Institut Pythéas

Direitos

Pesquisadores devem respeitar a seguinte declaração de direitos:

O editor e o detentor dos direitos deste trabalho é OSU STAMAR. This work is licensed under a Creative Commons Attribution (CC-BY 4.0) License.

GBIF Registration

Este recurso foi registrado no GBIF e atribuído ao seguinte GBIF UUID: 7d116cef-af47-4eb0-95a4-aaf69d54d325. OSU STAMAR publica este recurso, e está registrado no GBIF como um publicador de dados aprovado por GBIF France.

Palavras-chave

Occurrence; Observation; Mediterranean Sea; marine biodiversity; plankton; Metabarcoding

Dados externos

Os dados de recurso também estão disponíveis em outros formatos

18S V4 rDNA amplicon sequencing of marine water DNA samples collected in Norther-Western Mediterranean Sea from MOOSE-GE campain.	https://www.ebi.ac.uk/ena/browser/api/xml/PRJEB76575?download=true UTF-8 xml
A holistic perspective on planktonic communities across Northwestern Mediterranean Sea	https://doi.org/10.6084/m9.figshare.c.4303061 UTF-8 csv

Contatos

Nolan Lezzoche

Originador

Institut méditerranéen d'océanologie (MIO)

nolan.lezzoche@mio.osupytheas.fr

Aurélien Schmitt

Provedor Dos Metadados

OSU STAMAR

aurelien.schmitt@sb-roscoff.fr

https://orcid.org/0009-0006-1844-2765

Magali LESCOT

Ponto De Contato

Institut méditerranéen d'océanologie (MIO)

magali.lescot@mio.osupytheas.fr

https://orcid.org/0000-0001-8189-0823

Cobertura Geográfica

N/A

Coordenadas delimitadoras	Sul Oeste [39,995, 3,532], Norte Leste [43,883, 9,633]

Cobertura Taxonômica

Nenhuma descrição disponível

Reino	Chromista, Fungi, Animalia, Protozoa, Viridiplantae, Metazoa, Plantae
Filo	Arthropoda, Nemertea, Haptophyta, Myzozoa, Ctenophora, Gastrotricha, Labyrinthulata, Heterokontophyta, Nibbleridia, Oomycota, Echinodermata, Mollusca, Radiozoa, Picozoa, Ascomycota, Platyhelminthes, Sulcozoa, Ciliophora, Bryozoa, Dinophyta, Annelida, Brachiopoda, Chordata, Rhodophyta, Amoebozoa, Xenacoelomorpha, Bigyra, Loukozoa, Hemichordata, Prasinodermatophyta, Chlorophyta, Cercozoa, Cryptophyta, Choanozoa, Porifera, Streptophyta, Nematoda, Euglenozoa, Basidiomycota, Chaetognatha, Phoronida, Ochrophyta, Chytridiomycota, Cnidaria

Reino

Chromista, Fungi, Animalia, Protozoa, Viridiplantae, Metazoa, Plantae

Filo

Arthropoda, Nemertea, Haptophyta, Myzozoa, Ctenophora, Gastrotricha, Labyrinthulata, Heterokontophyta, Nibbleridia, Oomycota, Echinodermata, Mollusca, Radiozoa, Picozoa, Ascomycota, Platyhelminthes, Sulcozoa, Ciliophora, Bryozoa, Dinophyta, Annelida, Brachiopoda, Chordata, Rhodophyta, Amoebozoa, Xenacoelomorpha, Bigyra, Loukozoa, Hemichordata, Prasinodermatophyta, Chlorophyta, Cercozoa, Cryptophyta, Choanozoa, Porifera, Streptophyta, Nematoda, Euglenozoa, Basidiomycota, Chaetognatha, Phoronida, Ochrophyta, Chytridiomycota, Cnidaria

Cobertura Temporal

Data Inicial / Data final	2017-09-01 / 2019-06-30

Dados Sobre o Projeto

he annual campaigns MOOSE-GE, initiated in 2010, are part of the long-term observation network of the Mediterranean, MOOSE, network labeled SOERE Allenvi and SNO by the INSU in 2016 and 2019. This observation network aims to monitor the long-term evolution of the northwestern Mediterranean in the context of climate change and anthropogenic pressure, in order to be able to detect and identify the trend of environmental anomalies in this marine ecosystem. MOOSE aims to maintain an integrated and multidisciplinary observation network in the Mediterranean Sea in accordance with the marine infrastructures ILICO, EURO-ARGO and EMSO and the global networks OceanSites and OceanGliders in which MOOSE is involved. The objectives of these campaigns carried out in 2010, 2011 and 2013 on the Tethys II (INSU), in 2012, 2014, 2015 on the Suroît then in 2016, 2017 and 2018 on the Atalante, and in 2019 and 2021 on Thalassa are : annual maintenance of the 4 moorings LION, DYFAMED in leg 1 then Planier and Lacaze-Duthiers in leg 2 (automatic measurements, particle traps). mapping and monitoring the evolution of water mass properties, biogeochemical content and zooplankton communities. training for Master M2 Sorbonne University (OACOS, OEM) and ENSTA students. deployment and collection of Argo profiling floats

Título	MOOSE-GE
Identificador	https://doi.org/10.18142/235

O pessoal envolvido no projeto:

Coppola Laurent

https://orcid.org/0000-0003-0473-1129

Métodos de Amostragem

The MOOSE-GE network covers the north-western Mediterranean Sea, including the Lion Gulf and Ligurian Sea. Cruises in 2017, 2018 and 2019 were conducted respectively from 31 August to 23 September 2017, from 14 May to 06 June 2018 and from 08 June to 01 July 2019 with 16 biological stations in 2017 and 15 in 2018, and 18 in 2019. At each station, a rosette carrying 21 Niskin bottles (12 L) and equipped with a CTD (Seabird Electronics), measuring biophysical parameters at each depth (salinity, dissolved oxygen, fluorimetry, temperature) and a triple-net tow (64-200 and 500µm meshsizes) were deployed.

Área de Estudo	northwestern Mediterranean Sea

Descrição dos passos do método:

MOOSE-GE metabarcoding pipeline (https://gitlab.osupytheas.fr/moose/moose-pipeline) Nextflow pipeline inspired by SAMBA pipeline allowing to process MOOSE-GE 18SV4 barcode data. Bioinformatic steps : - Data integrity - [OPTIONAL] Raw data integrity checking (SAMBA) - Importing raw data - Create QIIME2 objects (SAMBA) - Primers removal - Remove primers from raw reads (SAMBA) - QC and feature table - QC and feature table and counts table (SAMBA) - ASV clustering - [OPTIONAL] Distribution and phylogeny based clustering (SAMBA) - Taxonomic assignation - IDTAXA classifier assignation with PR2 v5.0 DECIPHER trained reference database - Phylogeny - ASV sequences alignement and tree (SAMBA) - Phyloseq - Create R-Phyloseq object

Metadados Adicionais

Acknowledgements
Identificadores alternativos	https://ipt.data-terra.org/resource?r=plankton_metabarcoding_moose_ge_2017_2019